KONWIHR Project ParBaum

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ParBaum: Parallelization of Maximum Likelihood-Methods for the Reconstruction of a Widespread Genealogical Tree of Live from Multiple Alignments of Molecular Data

Project summary

KONWIHR funding

  • initial KONWIHR funding: 11/2001-10/2004

Contact:

  • Prof. A. Bode, Fakultät für Informatik, TU-München
  • Dr. A. Stamatakis, Institut für Informatik, LMU-München

Selected publications

  • M. Ott, J. Zola, A. Stamatakis, S. Aluru: Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L, Supercomputing, 2007. Proceedings of the ACM/IEEE SC 2007 Conference (Supercomputing Conference '07, Reno, 10. - 16. Nov. 2007) (Ed: ACM/IEEE), (2007).
  • A. Stamatakis, T. Ludwig, H. Meier: RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees, BioInformatics, 21:(4) (2005) 456-463. External link: DOI:10.1093/bioinformatics/bti191
  • A. Stamatakis, M. Ott, T. Ludwig: RAxML-OMP: An efficient program for phylogenetic inference on SMPs, PaCT 2005 (Ed: V. Malyshkin), Springer (Berlin, Heidelberg), LNCS 3606 (2005) 288-302.
  • A. Stamatakis, T. Ludwig, H. Meier, M. J. Wolf: Accelerating parallel maximum likelihood-based phylogenetic tree calculations using subtree equality vectors, Supercomputing, 2002. Proceedings of the ACM/IEEE SC 2002 Conference (Supercomputing Conference '02) (Ed: ACM/IEEE), (2002).